Phylogenetic Tree Humans
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Unrooted v.1.0
Unrooted is a tree drawing software able to draw any binary tree expressed in the standard phylogenetic tree format (e.g., the format used by the PHYLIP package). Trees are drawn in an unrooted way, that is, using a circular shape, with labels aligned ...
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TreeDis v.2.1
TreeDis analyze phylogenetic trees with this tool, a C++ console software designed to find the patristic distances between all taxa in a phylogenetic tree. The input file is a treefile in New Hampshire (default) or Njtree file format. The output is a ...
HyperTree v.1.0
View phylogenetic tree with this tool. HYPERTREE is a Java phylogenetic tree viewer, with a hyperbolic ('fish-eye') view and editing capabilities that help in managing very large trees.HyperTree Features:
1. visualize large trees with hundreds of ...
PhyloWidget v.Beta
View and edit phylogenetic tree with the help of this tool. PhyloWidget is a software for viewing, editing, and publishing phylogenetic trees online. It is small, contains a simple yet strong user interface, and contains many novel features not available ...
BaTS v.1.0 Beta Build 2
BaTS (Bayesian Tip-Significance testing), phylogeny-trait association is defined as the extent to which neighbouring taxa in a phylogenetic tree share a character of interest.
This may be a classical phenotypic trait, a molecular attribute, disease ...
SEMPHY v.2.0 Beta 1
SEMPHY is a software for data-intensive phylogenetic reconstruction. It infers phylogenies by Maximum Likelihood, the most established criterion for finding the correct phylogenetic tree.
SEMPHY searches for both the most likely topology of the evolutionary ...
IQPNNI - Important Quartet Puzzling and NNI Operation v.3.3.2
An efficient tree reconstruction method (IQPNNI) is introduced to reconstruct a phylogenetic tree based on DNA or amino acid sequence data. Our approach combines various fast algorithms to generate a list of potential candidate trees. The key ingredient ...
Treecat v.1.0
Phylogenetic tree based contig arrangement tool. treecat can take several genomes and their relationships in a phylogenetic tree into account to estimate a possible ordering of the contigs.
A so called layout graph shows the unique order where possible ...
TreeSnatcher Plus v.June 2010
A Phylogenetic Tree Capturing Tool. TreeSnatcher Plus is a GUI-driven Java software that automates the generation of a machine- readable representation of multifurcating phylogenetic trees contained in pixel images. It uses image processing methods to ...
FASTML v.2.02
FASTML is a software for computing the ancestral amino-acid sequences of a phylogenetic tree.FASTML uses flags in the command line arguments:
-For help, type "fastml.exe -h"
-s seq.aln = the sequence input file name.
-t tree.txt = the input ...
AcidMiner v.02.beta
Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
HyperGeny v.1.0
HyperGeny is a software for viewing large phylogenetic trees. This software allows hyperbolic visualization of very large tree structures. The term phylogenetic tree or evolutionary tree is defined by a branching diagram or "tree" showing the inferred ...
SplitsTree4 v.4.11.3
Phylogenetic networks computation made easy. SplitsTree4 is the leading software for computing unrooted phylogenetic networks from molecular sequence data. Given an alignment of sequences, a distance matrix or a set of trees, the software will compute ...
MANTiS v.1.1
Build a relational database integrating, in a phylogenetic framework. MANTiS is an software system that: builds a relational database integrating, in a phylogenetic framework, all Ensembl genes, corresponding PANTHER molecular functions and biological ...