Phylogenetic Tree Humans
TreeQ-Vista v.1.2.0
TreeQ-Vista is a general multiplatform exploratory tool, is for presenting functional annotations in a phylogenetic context. Traits, such as phenotypic and genomic properties, are interactively queried from a user-provided relational database with a user-friendly ...
HyperProtein v.1.0
It aligns these sequences, builds a phylogenetic tree for the species and generates the sequences for the ancestral species in the tree. It then allows you to explore the differences along an evolutionary branch of the tree including exploring the changes ...
Unipro UGENE v.1. 9. 2002
Main features:
Integrated tools
-Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
-HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
-PCR Primers design using Primer 3;
-Cloning in silico capabilities;
-Queries to NCBI BLAST and CDD databases;
-Protein secondary structure prediction using GOR IV and PSIPRED;
-Phylogenetic analysis with ...
UGENE v.1.9.8
Phylogenetic analysis with Phylip;
6. Search for restriction enzymes and integration with REBASE;
7. Extremely fast repeat finder;
8. DNA reference assembly using Bowtie;
9. Search for transcription factor binding sites using SITECON;
10.
NCBI Genome Workbench v.2.5.0
Genome Workbench can display sequence data in many ways, including graphical sequence views, various alignment views, phylogenetic tree views, and tabular views of data. It can also align your private data to data in public databases, display your data ...
SPADE v.1.3
SequencePad is a sequence alignment editor that applies an interactive phylogenetic tree window to assist deliberate sequence selection, a critical standard for proper evolutionary conservation analysis and protein-protein interface patch prediction.
PSI Protein Classifier v.1.0 Release 1 Build 49
Automation of the PSI-BLAST results analysis. Summarize PSI-BLAST iteration results with this tool. PSI Protein Classifier is a new software that allows to summarize the consecutive and independent PSI-BLAST iteration results. The technical opportunities ...
GeneDoc v.2.7.000
Phylogenetic Tree support.GeneDoc installs as a regular windows program, into a GeneDoc software group. After starting GeneDoc, use file open and read in a MSF (Multiple Sequence File) file. GeneDoc saves configuration information for these files in ...
MB DNA Analysis v.6.84
phylogenetic tree building, DND dendrograms calculation
8. protein analysis (translation, chemical properties, prediction of the secondary structure for proteins using Chou-Fasman method)
9. codon usage table calculation (also for selected ORFs)
10.
Rate4Site v.2.01
This allows taking into account the stochastic process underlying sequence evolution within protein families and the phylogenetic tree of the proteins in the family. The conservation score at a site corresponds to the site's evolutionary rate.The sole ...
DNAdistree v.1.0
it builds phylogenetic tree thanks to four agglomerative algorithms;
4. it computes statistical measures related to distance matrices and/or distance-based trees.DNAdistree is designed to infer distance-based phylogenetic trees that display accurate ...
McRate v.1.0
In contrast to other existing programs McRate considers all possible phylogenetic scenarios among the sequences under study, rather than relying on a single best tree.The degree to which an amino-acid site is free to vary is powerfully dependent on its ...
Unipro UGENE for Mac v.1.11.4
Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with ...
Unipro UGENE for Linux v.1.11.4
Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with ...
Unipro UGENE 64-bit v.1.11.4
Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with ...