Software Developed by cibiv.at
TreeSnatcher Plus v.June 2010
A Phylogenetic Tree Capturing Tool. TreeSnatcher Plus is a GUI-driven Java software that automates the generation of a machine- readable representation of multifurcating phylogenetic trees contained in pixel images.
STC (Shortest Triplet Clustering) v.1.2
Shortest Triplet Clustering. A new distance-based clustering method, triplet clustering algorithm (STC), to reconstruct phylogenies. The main idea is the introduction of a natural definition of so-called k-representative sets.
SISSI: Simulating Sequence Evolution with Site-Specific Interactions v.1.0
Simulating Sequence Evolution with Site-Specific Interactions. SISSI is a utility tool to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices.
IQPNNI - Important Quartet Puzzling and NNI Operation v.3.3.2
Important Quartet Puzzling and NNI Operation. An efficient tree reconstruction method (IQPNNI) is introduced to reconstruct a phylogenetic tree based on DNA or amino acid sequence data.