Rna Polymerase
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VARNA (Visualization Applet for RNA) v.3.8
VARNA (Visualization Applet for RNA) is a Java lightweight component and applet for drawing the RNA secondary structure. Create RNA structures with this tool. It is also a Swing component that can be very easily included in an existing Java code working ...
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CLC Main Workbench v.6 2
CLC Main Workbench aggregates user friendly gene expression analysis with all features of CLC Protein Workbench, CLC RNA Workbench, and CLC DNA Workbench in one integrated software package.
CLC Main Workbench creates a software environment ...
CLC Sequence Viewer v.6. 5. 2003
Bioinformatics features in CLC Sequence Viewer
-Multiple alignment of DNA, RNA, and proteins
-Two proprietary algorithms
-ClustalW
-Muscle
-T-Coffee
-MAFFT
-Kalign
-Consensus sequence determination and ...
ArrayExpress R Workbench v.1. 1. 2001
ArrayExpress is an R based pipeline for pre-processing, expression estimation and data quality assessment of high throughput sequencing transcriptional profiling (RNA-seq) data sets. The pipeline starts from raw sequence files and produces standard Bioconductor ...
REST 2008 v.2.0.7
REST 2008 is a standalone software package for analyzing gene expression using real-time amplification data. The software addresses issues surrounding the measurement of uncertainty in expression ratios by introducing randomization and bootstrapping techniques.
CrossLink v.2 1
CrossLink is a versatile tool for the exploration of relationships between RNA sequences. After a parametrization phase, CrossLink uses the established tools BLAST, Vmatch and RNAhybrid to determine sequence relationships. Then, nucleotide sequences and ...
GeneView v.8.5.1.102
The data to be visualized are taken from the GenBank of NIH (National Institute of Health), an annotated collection of publicly accessible DNA and RNA sequences.
It was entirely written in the programming language JAVA. The choice for JAVA was made ...
DNASIS MAX v.3.0
MiraiBio DNASIS MAX is a bioinformatics software for DNA/RNA/Amino Acid sequence analysis. DNASIS MAX bioinformatics software helps life scientists edit, annotate and analyze DNA, RNA and amino acid sequences. It includes a comprehensive set of analytical ...
MiRPI v.1.0
MiRNAs have so far been identified mostly by specific cloning of small RNA molecules, complemented by computational methods. Find conserved miRNAs with this tool.Computational identification of miRNA is faster and generally follows AB initio and sequence ...
4SALE v.1.5
4SALE is a software for Synchronous RNA Sequence and Secondary Structure Alignment and Editing. 4SALE now integrates lara as a sequence and secondary structure aligment alternative to the 4SALE alignment option.
In sequence analysis the multiple alignment ...
XRNA v.1.1.12
Create RNA secondary structure diagrams fast and easy. XRNA is a Java based suite of tools for the creation, annotation and display of RNA secondary structure diagrams.XRNA provides editing tools for easy modification of publication quality secondary ...
AltAnalyze v.2.0.7.1 Development
AltAnalyze is a freely available, cross-platform software designed to assess changes in protein sequence, domain composition, and microRNA targeting from user RNA sequencing (RNASeq) or microarray data. To do this, AltAnalyze associates user sequence-level ...
RNAstructure v.5.1
RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. The core of RNAstructure is a dynamic programming algorithm to predict RNA or DNA secondary structures from sequence based on the principle of minimizing free ...
SeqWord Sniffer v.1.0
SeqWord Sniffer is a Genomic DNA sequence automatic searcher, do an automatic search in genomic DNA sequences for loci enriched with the horizontally transferred elements, fitness genes, giant genes, genes for ribosomal RNA and proteins. Give SeqWord ...