Distance Matrix
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Statgen v.1.0
StatGen uses information from a genetic distance matrix or a newick tree to summarize the sequence variation within or between groups of sequences with summary statistics and produce graphical reports of those statistics.
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TreeFit v.1.0
TreeFit creates neighbor-joining and UPGMA trees from a genetic distance matrix, and then compares the observed genetic distance between populations with the genetic distance in the tree. The similarity between these distances is express as R-squared, ...
DTscore v.1.0
All it takes as input is a distance matrix between copies. In this matrix, the rows and columns need to be ordered in the same way as the copies are ordered on the locus. DTscore can be applied to relatively large datasets (more than a hundred copies).
Codessa v.2 7
CODESSA calculates the following standard indexes: Weiner (atomic distance matrix), Randic (connectivity patterns) and Kier-Hall (connectivity), Kier (shape and flexibility), Balaban's J index and various information content descriptors (total, structural, ...
TreeDis v.2.1
The output is a full patristic distance matrix (default) or an upper-right / lower-left matrix.
FastTree v.2.1.3
During neighbor joining, FastTree stores profiles of internal nodes instead of a distance matrix, which reduces the memory required. FastTree uses a combination of three heuristics to speed up this phase: it remembers the best join for each node, as ...
GA Fuzzy Clustering v.1.0
Distance matrix:
1. First line contains caption (single word or a string in the 1st position)
2. and names of elements
3. Each line (beginning with second) must contain name of element (the same, as in the corresponding column) and values ...
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Feature Prioritization Roadmap Matrix
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