Protein Structure Prediction
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Unipro UGENE 64-bit v.1.11.4
Unipro UGENE 64-bit is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Features: Integrated tools Multiple sequence alignment using ...
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Modeller v.9v7
MODELLER is used for homology or comparative modeling of protein three-dimensional structures (1,2). The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all ...
CLC RNA Workbench v.4 5
Features:
-Secondary structure prediction
-Graphical view and editing of secondary structure
-Tabular view of structures and energy contributions
-Symbolic representation in sequence view
- Unleash the hidden powers in your ...
DAMBE (Data Analysis and Molecular Biology and Evolution) v.5.2.30
Sequence alignment
* General sequence alignment with nucleotide and amino acid sequences
* Aligning protein-coding nucleotide sequences against aligned amino acid sequences2. Molecular phylogenetics
* Distance-based methods including neighbor-joining, ...
Probe Freeware v.2.12.071128
Probe reads atomic coordinates from protein databank (PDB) format files and writes dot-lists for inclusion in a kinemage file. Alternatively, the packing information can be quantified and displayed in a table listing scores for van der Waals interactions, ...
JDet v.1.2.0
Protein alignment made easy. JDet is a Java bioinformatics protein alignment software. It covers the visualization of functional important residues and specifity determining positions (SDPs) in proteins. These positions characterize functional specifity ...
Suitename v.0.3.070628
From dihedral-angle input for a specific RNA structure (usually from Dangle), Suitename categorizes the RNA backbone geometry of each suite (the sugar-to-sugar version of a residue) either as an outlier ("!!") or as belonging to one of the 53 defined ...
Geneious PRO x64 v.6.0.4
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence ...
Geneious PRO for Vista v.4.7.6
Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence ...
RNAshapes v.2.0
Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards.
Mage v.6.44.060606
View 3D vector images with this tool. Mage is a 3D vector display software which shows "kinemage" graphics. Used in both teaching and research, in applications ranging from estuary ecology to X-ray crystallography model quality assessments, Mage displays ...
Bodil v.0.81 Beta
Most of the modules available in the present release provide visualization tools, with protein modeling, small-molecule ligand docking and other modules being currently under development. New modules can easily be added via a documented C++ software programming ...
KiNG v.2.17.090829
View three-dimensional vector graphics with this tool. KiNG (Kinemage, Next Generation) is an interactive system for three-dimensional vector graphics. It supports a set of graphics primitives that make it suitable for many types of graphs, plots, and ...
AlleleID v.7.01
PREMIER Biosoft :: Design & analysis software for Real Time PCR, qPCR, Primer Design, TaqMan«, molecular beacons, microarray, glycan structure, identification of bacteria, plasmid map drawing, alternative gene splicing, gene expression, snp detection ...