Protein Structure Prediction
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Protein Insight v.2.2
Protein Insight is a outstanding software that allows you to visualize protein structures. A the Microsoft Direct3D and the Microsoft .net framework based protein structure visualization platform. Because Protein Insight completely utilize a vertex shader ...
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StrBio java class libraries v.b.1.2
Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
Voroprot v.0.7.6.3
An interactive tool for the analysis and visualization of complex geometric features of protein structure. Voroprot provides a unique set of abilities for exploring geomeric features of protein structure. Voroprot allows the construction and visualization ...
RNAstructure v.5.1
RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. The core of RNAstructure is a dynamic programming algorithm to predict RNA or DNA secondary structures from sequence based on the principle of minimizing free ...
FoldIt light v.5.1.0b
'FoldIt light' is a molecular modelling program to visualize and manipulate interactively protein structure files from the Brookhaven Protein Data Bank (PDB). It's an integrated environment allowing 3D manipulations as well as statistical analysis. .
BARNACLE v.0.21
BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
GTfold v.1.19
A Scalable Multicore Code for RNA Secondary Structure Prediction ...
Reduce v.3.14.080821
Add hydrogens to a Protein DataBank with this tool. Reduce is a software for adding hydrogens to a Protein DataBank (PDB) molecular structure file. Hydrogens are added in standardized geometry with optimization of the orientations of OH, SH, NH3+, Met ...
UGENE v.1.9.8
Unipro UGENE is a free visual program solution for DNA and protein sequence analysis. A free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. It features multiple sequence ...
HyperProtein v.1.0
's new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the ...
Cn3D v.4 3
Cn3D ('see in 3D') is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez Structure database. Cn3D is provided for Windows and Macintosh, and can be compiled on Unix. Cn3D simultaneously displays ...
Unipro UGENE v.1. 9. 2002
Main features:
Integrated tools
-Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
-HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
-PCR Primers design using Primer 3;
-Cloning in silico capabilities;
-Queries to NCBI BLAST and CDD databases;
-Protein secondary structure ...
Jalview v.2.7
the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose
alignment editor.Jalview Features:
1. Viewing
2. Reads and writes alignments in a variety of formats (Fasta, PFAM, MSF, Clustal, BLC, PIR)
3.
Unipro UGENE for Mac v.1.11.4
Unipro UGENE for Mac is a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, analysis, annotation of genetic sequences. Features: Integrated tools Multiple sequence alignment using ...