Multiple Sequence
Advertisement
GeneDoc v.2.7.000
GeneDoc is a Full Featured Multiple Sequence Alignment Editor, Analyser and Shading Utility for Windows.GeneDoc Features:
1. Data Analysis and Visualization.
2. Score assisted manual alignment.
3. Paginated Printouts.
4. Windows Based.
Advertisement
Mallard v.1.02
Mallard is a software for screening 16S rRNA clone libraries, and similar multiple sequence alignments for chimeras and other anomalies.The nature of DNA sequencing is such that artifacts are inevitably introduced and, for 16S rDNA, common errors are ...
Recombination Analysis Tool (RAT) v.1.0
The Recombination Analysis Tool (RAT) is an uncomplicated and intuitive cross-platform Java-based software intended for high-throughput, distance-based analysis of both DNA and protein multiple sequence alignments, in any one of seven different file ...
MAFFT v.6.843
MAFFT is a multiple sequence alignment software for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of < 200 sequences), FFT-NS-2 (fast; for alignment of < 10,000 sequences), etc.
Rate4Site v.2.01
Rate4Site is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA).The rate of evolution is not constant among amino acid sites: some positions evolve slowly ...
LogoBar v.1.0
With this software you can generate protein sequence logos from multiple sequence alignments
on your own computer, and you will get an additional output file that shows the amino acid incidence
at every position of the multiple sequence alignment.
McRate v.1.0
McRate is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA). In contrast to other existing programs McRate considers all possible phylogenetic scenarios ...
Primer Validator v.1.3
Search oligonucleotide in multiple sequence files. Primer Validator is a scientific utility which allows researchers to verify whether the designed primer is unique for the gene of interest or not. It will be useful if that gene is a member of a large ...
BiasViz v.2.0.0
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
MSA2SNP v.1.1
MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.
GCK v.2.5.13
Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ...
UGENE v.1.9.8
It features multiple sequence alignment and a complex HMM builder and search module.UGENE Features:
Main features:
1. Multiple sequence alignment using MUSCLE 3,4 and KAlign;
2. HMM profiles build and search, based on the source of HMMER ...
Geneious Basic v.5.6.4
Align and build trees - Basic pairwise alignment, multiple alignment and tree building methods including bootstrapping and consensus trees.
4. Import and Export - Import and export Newick, Nexus, FASTA and Endnote formats. Import PDF, 3D Structures, ...
Primer Premier v.6 10
Multiple sequence alignment- Use the popular Clustal W algorithm to align sequences from your desktop (available in Windows version only).Algorithm- Calculates Tm using Breslauer values.Long PCR- Handles sequences up to 50 KB.