Amino Acids And Proteins
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AmbiguityRemover v.1.0
Under the neutral model of protein evolution, a comparison of sequences from two species should show equal numbers of substitutions in each direction for each pair of amino acids.The programs available here require a set of aligned homologous pairs of ...
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DAMBE (Data Analysis and Molecular Biology and Evolution) v.5.2.30
Sequence alignment
* General sequence alignment with nucleotide and amino acid sequences
* Aligning protein-coding nucleotide sequences against aligned amino acid sequences2. Molecular phylogenetics
* Distance-based methods including neighbor-joining, ...
CLC Sequence Viewer for Mac and Linux v.6.8.1
Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and proteins Two proprietary algorithms ClustalW Muscle T-Coffee MAFFT Kalign Consensus sequence determination and management Conservation score along alignments Open reading ...
Protein Investigator v.3.0.2
In the lectures on Hemoglobin (and later in the Protein structure lab), you saw the 3-dimensional structure of proteins. This allowed you to see a protein in its full 3-dimensional form and to make hypotheses about the interactions between various side ...
AlnEdit v.1.0
This is an alignment view of the individual blades of a few 7 bladed WD40 repeat proteins. All uppercase characters are colored, coloring scheme is clustalx
2. Topmost is the 'coloring window'. Here you can select the colors for the individual amino ...
Cylindrical BLAST Viewer v.1.4
These fields deal with sequences of residues, polymerized to form very long chains of heterogeneous nucleotide bases, or amino acids, which make up genes and proteins, respectively, and it is often useful to identify similarities between sequences using ...
MMass (Open Source Mass Spectrometry Tool) v.5.2.0
This table can then be used to automatically compare, within a specified tolerance, each difference with the respective masses of all amino acids, calculated dipeptides or specified mass value.8. Mascot Search:
Although mass spectrometry is a very ...
LogoBar v.1.0
With this software you can generate protein sequence logos from multiple sequence alignments
on your own computer, and you will get an additional output file that shows the amino acid incidence
at every position of the multiple sequence alignment.
AsymmetryScaler v.1.0
AsymmetryScaler create asymmetry index fast and easy, take the substitution matrix produced by AsymmetryCounter and produces an asymmetry index, in which the amino acids are arranged from least preferred in species 2 to most preferred in species 2.The ...
AMMP v.1.65
It can manipulate both small molecules and macromolecules including proteins, nucleic acids and other polymers. In addition to standard features, like numerically stable molecular dynamics, fast multipole method for including all atoms in the calculation ...
Lab Helper v.2.5.1.0
--Added information about amino acids so you can quickly look up codons, structural properties and other important details.
Please feel free to get in touch if you have any suggestions for future improvements or find a bug ...
Bio2MIDI
Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can select specific data sections to be translated, called exons and introns, and mark areas of interest to be played in a different instrument.
ChemToolBox v.1 1
ChemToolBox is a software destinated to a broad audience (any level students, Ph.D. or even senior scientists). More precisely, it will be the ideal partner of chemists (organic chemistry, analytical chemistry or polymer chemistry), biologists and biochemists.
CLC Sequence Viewer v.6. 5. 2003
Bioinformatics features in CLC Sequence Viewer
-Multiple alignment of DNA, RNA, and proteins
-Two proprietary algorithms
-ClustalW
-Muscle
-T-Coffee
-MAFFT
-Kalign
-Consensus sequence determination and ...