Amino Acid Quiz
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IQPNNI - Important Quartet Puzzling and NNI Operation v.3.3.2
An efficient tree reconstruction method (IQPNNI) is introduced to reconstruct a phylogenetic tree based on DNA or amino acid sequence data. Our approach combines various fast algorithms to generate a list of potential candidate trees. The key ingredient ...
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FASTML v.2.02
FASTML is a software for computing the ancestral amino-acid sequences of a phylogenetic tree.FASTML uses flags in the command line arguments:
-For help, type "fastml.exe -h"
-s seq.aln = the sequence input file name.
-t tree.txt = the input ...
Simprot v.1.01
Protein evolution has been largely modeled by considering the amino acid substitution process; however there have been few studies of the process of insertion and deletion.
Simprot allows for several models of amino acid substitution (PAM, JTT and ...
Leaphy v.1.0 Beta
Leaphy uses maximum likelihood (ML) to estimate trees from aligned amino acid and nucleotide sequences under a variety of commonly used and popular models.The 1.0 version of Leaphy currently available is a beta release, which means that it is still in ...
McRate v.1.0
McRate is a software for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA). In contrast to other existing programs McRate considers all possible phylogenetic scenarios ...
Iso2l v.2.0
iso2l is a utility to calculate the isotopic distribution of a chemical formula or a amino acid chain. Java based isotopic distribution calculator.Requirements:
* Java ...
BiOpen v.2.3
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