Protein Sequences
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BioSeqAnalyzer v.1.0
BioSeqAnalyzer is a bioinformatics software tool for analyzing DNA and protein sequences. Its Windows interface makes sequence analysis extremely easy. BioSeqAnalyzer, registered version, supports the following operations: Alignment Scoring. Linear global ...
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HyperProtein v.1.0
's new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the ...
Seq Manip Suite v.2.0
The Seq Manip Suite (Sequence Manipulation Suite) is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching, and for program and algorithm ...
FastTree v.2.1.3
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, ...
GeneCoder v.1.5
GeneCoder is a freely available, comprehensive molecular biology program package for use in molecular cloning and sequence analysis of DNA and protein sequences.GeneCoder Features:
Restriction Enzyme Analysis
1. Dynamic Restriction Site Lists.
BL!P v.Beta 17
BL!P, BLAST in Pivot, is a computer software that automates the NCBI BLAST alignment of coding DNA or protein sequences and processes the results for visualization in the Microsoft Live Labs software Pivot. Automate the NCBI BLAST alignment of coding ...
AlnEdit v.1.0
AlnEdit is for protein sequences. AlnEdit is capable of handling large alignments (thousands of sequences) without slowing to a crawl and where sequence alignments could be edited by hand.A few features:
1. This is an alignment view of the individual ...
ProtSeqFetch v.1.0
Download protein sequences with ease. ProtSeqFetch is program for generating artificial metagenomes. The software downloads protein sequences at the genera level directly from the National Center for Biotechnology Information (NCBI) or extracts them from ...
Protparam Widget v.1.1
The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field. amino acid table widget leadership at aborygen.com. certification training to manage the ...
DPCluster v.1.0
Software to cluster protein sequences into functionally similar groups. Journal reference: http://bioinformatics. oxfordjournals. org/cgi/content/short/24/16/1765 ...
Sequence Alignment v.1.0
A tool to compare two Protein Sequences and show similarities with the help of dotplot.
CLC Sequence Viewer v.6. 5. 2003
Bioinformatics features in CLC Sequence Viewer
-Multiple alignment of DNA, RNA, and proteins
-Two proprietary algorithms
-ClustalW
-Muscle
-T-Coffee
-MAFFT
-Kalign
-Consensus sequence determination and management
-Conservation score along alignments
-Open reading frame determination
-Easy access to web-based protein and nucleotide ...
Modeller v.9v7
MODELLER implements comparative protein structure modeling by satisfaction of spatial restraints (3,4), and can perform many additional tasks, including de novo modeling of loops in protein structures, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or ...
AmbiguityRemover v.1.0
The programs available here require a set of aligned homologous pairs of protein sequences from two species. The AmbiguityRemover software takes the file of sequences and puts ambiguously aligned sites next to alignment gaps in lower case, so they can ...