Protein Sequence
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AVANA - Antigen Variability ANAlyzer v.0.31.200909141330
The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
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Dasty v.2.2010.10.08
Dasty is a web client for visualizing protein sequence feature information using DAS, the Distributed Annotation System.
ICRPfinder v.1
ICRPfinder finds or generates DNA patterns which can include restriction enzyme recognition sites in coding sequences without changing the translated protein sequence.
PSI Protein Classifier v.1.0 Release 1 Build 49
PSI Protein Classifier is a new software that allows to summarize the consecutive and independent PSI-BLAST iteration results. The technical opportunities of the software are explained. Two examples of the PSI Protein Classifier software are given. Iterative ...
Protein Investigator v.3.0.2
However,
you were not able to test your hypotheses because the software did not allow you to make changes to the protein sequence and observe their effects on the protein's structure and function.In this lab, you will get an opportunity to interactively ...
ProSAT (PROtein reSidue Annotation Toolkit) v.1.0
ProSAT_Predict is the software to predict the annotation for each residue from the built models, and output a L x n dimension profile, outputting the score from each of the n one-versus-rest SVM models for each amino acid residue and L is the length of the protein sequence. In case ...
CLC Main Workbench v.6 2
CLC Main Workbench creates a software environment enabling users to make a large number of advanced DNA, RNA, and protein sequence analyses, combined with gene expression analysis, smooth data management, and excellent graphical viewing and ...
Treefinder v.1.0
The software infers even large trees by maximum likelihood under a variety of models of sequence evolution. It accepts both nucleotide and amino acid data and takes rate heterogeneity into account.Separate models can be assumed for user-defined data ...
GeneCoder v.1.5
Translate DNA sequences into a protein sequence by one phase or three phase.
2. Perform remote Entrez Sequence Queries and download DNA and protein sequences from NCBI.
3. Search for short sequences within a sequence file.Requirements:
* ...
HyperProtein v.1.0
Unlike individual software programs that provide capability for some aspect of protein sequence or structure, such as sequence alignment, HyperProtein puts together a multitude of Bioinformatics and Molecular Modeling tools related to the science that ...
CLC Combined Workbench v.3.0
CLC Combined Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. .
NeedlemanWunsch v.0.3.4
Aligns DNA, RNA, protein sequence and more!See our sister project local alignment using Smith-Waterman:http://sourceforge.net/projects/smithwaterman/ ...
MMass (Open Source Mass Spectrometry Tool) v.5.2.0
Several modules and tools for protein sequence handling and mass spectrum interpretation. Program mMass presents an open source multi-platform package of simple tools for mass spectrometric data analysis. The mMass software consists in several modules ...
SPADE v.1.3
Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available.In addition to standard structural bioinformatics accessories (molecular viewer, solvent accessibility calculation, secondary structure recognition, ...