Protein Sequence Families
Advertisement
AVANA - Antigen Variability ANAlyzer v.0.31.200909141330
The Antigen Variability ANAlyzer (AVANA) tool uses information entropy to measure variability in protein sequence alignments. It also compares alignments using mutual information, identifying the mutations that characterize specific sequence sets.
Advertisement
Dasty v.2.2010.10.08
Dasty is a web client for visualizing protein sequence feature information using DAS, the Distributed Annotation System.
ICRPfinder v.1
ICRPfinder finds or generates DNA patterns which can include restriction enzyme recognition sites in coding sequences without changing the translated protein sequence.
PSI Protein Classifier v.1.0 Release 1 Build 49
PSI Protein Classifier is a new software that allows to summarize the consecutive and independent PSI-BLAST iteration results. The technical opportunities of the software are explained. Two examples of the PSI Protein Classifier software are given. Iterative ...
Protein Investigator v.3.0.2
Explore protein structure fast and easy. In the lectures on Hemoglobin (and later in the Protein structure lab), you saw the 3-dimensional structure of proteins. This allowed you to see a protein in its full 3-dimensional form and to make hypotheses about ...
ProSAT (PROtein reSidue Annotation Toolkit) v.1.0
PROtein reSidue Annotation Toolkit. ProSAT toolkit is a set of programs that allow building SVM based models for annotating amino acid residues in protein sequences using user supplied features (like PSI-BLAST profiles, or PSIPred profiles). In particular, ...
CLC Main Workbench v.6 2
CLC Main Workbench aggregates user friendly gene expression analysis with all features of CLC Protein Workbench, CLC RNA Workbench, and CLC DNA Workbench in one integrated software package.
CLC Main Workbench creates a software environment ...
Treefinder v.1.0
The software infers even large trees by maximum likelihood under a variety of models of sequence evolution. It accepts both nucleotide and amino acid data and takes rate heterogeneity into account.Separate models can be assumed for user-defined data ...
GeneCoder v.1.5
GeneCoder is a freely available, comprehensive molecular biology program package for use in molecular cloning and sequence analysis of DNA and protein sequences.GeneCoder Features:
Restriction Enzyme Analysis
1. Dynamic Restriction Site Lists.
HyperProtein v.1.0
's new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the ...
CLC Combined Workbench v.3.0
CLC Combined Workbench aggregates all features of CLC Free Workbench, CLC Protein Workbench, and CLC Gene Workbench in one integrated software package.CLC Combined Workbench creates a software environment enabling users to make a large number of advanced ...
NeedlemanWunsch v.0.3.4
Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more!See our sister project local alignment using Smith-Waterman:http://sourceforge.net/projects/smithwaterman/ ...
MMass (Open Source Mass Spectrometry Tool) v.5.2.0
Several modules and tools for protein sequence handling and mass spectrum interpretation. Program mMass presents an open source multi-platform package of simple tools for mass spectrometric data analysis. The mMass software consists in several modules ...
SPADE v.1.3
Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available.In addition to standard structural bioinformatics accessories (molecular viewer, solvent accessibility calculation, secondary structure recognition, ...